You can find the source data per publication below. To browse our public list of source data: FIGSHARE
2019
-Eduard Ocaña-Pallarès, Sebastián R. Najle, Claudio Scazzocchio, Iñaki Ruiz-Trillo (2019)
Reticulate evolution in eukaryotes: Origin and evolution of the nitrate assimilation pathwa
https://doi.org/10.1371/journal.pgen.1007986
-Maureen A. O’Malley, Michelle M. Leger, Jeremy G. Wideman and Iñaki Ruiz-Trillo (2019)
Concepts of the last eukaryotic common ancestor.
Nature Ecology & Evolutionvolume 3, pages338–344 (2019)
2018
– Àlbert Rafels-Ybern, Adrian Gabriel Torres, Noelia Camacho, Andrea Herencia-Ropero, Helena Roura Frigolé, Thomas F Wulff, Marina Raboteg, Albert Bordons, Xavier Grau-Bove, Iñaki Ruiz-Trillo, The expansion of Inosine at the wobble position of tRNAs, and its role in the evolution of proteomes
Molecular Biology and Evolution, msy245, https://doi.org/10.1093/molbev/msy245
– Seitaro Denbo, Katsutoshi Aono, Takaaki Kai, Rei Yagasaki, Iñaki Ruiz-Trillo and Hiroshi Suga (2018)
Revision of the Capsaspora genome using read mating information adjusts the view on premetazoan genome
Development, Growth & Differentiation, 2018; 1- 9
– Iñaki Ruíz-Trillo y María Ferrer-Bonet (2018).
¿Con quién compartimos el planeta?
Investigación y Ciencia. Diciembre 2018
– Jon Brate, Ralf S. Neumann, Bastian Fromm, Arthur A.B. Haraldsen, James E. Tarver, Hiroshi Suga, Philip C.J. Donoghue, Kevin J. Peterson, Iñaki Ruiz-Trillo, Paul E. Grini, and Kamran Shalchian-Tabrizi (2018)
Unicellular Origin of the Animal MicroRNA Machinery
Current Biology https://doi.org/10.1016/j.cub.2018.08.018
– Sina M. Adl, David Bass, Christopher E. Lane, Julius Lukeš, Conrad L. Schoch, Alexey Smirnov, Sabine Agatha, Cedric Berney, Matthew W. Brown, Fabien Burki, Paco Cárdenas, Ivan Čepička, Ludmila Chistyakova, Javier del Campo, Micah Dunthorn, Bente Edvardsen, Yana Eglit, Laure Guillou, Vladimír Hampl, Aaron A. Heiss, Mona Hoppenrath, Timothy Y. James, Sergey Karpov, Eunsoo Kim, Martin Kolisko, Alexander Kudryavtsev, Daniel J. G. Lahr, Enrique Lara, Line Le Gall, Denis H. Lynn, David G. Mann, Ramon Massana i Molera, Edward A. D. Mitchell, Christine Morrow, Jong Soo Park, Jan W. Pawlowski, Martha J. Powell, Daniel J. Richter, Sonja Rueckert, Lora Shadwick, Satoshi Shimano, Frederick W. Spiegel, Guifré Torruella i Cortes, Noha Youssef, Vasily Zlatogursky, Qianqian Zhang.
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
Journal of Eukaryotic Microbiology https://doi.org/10.1111/jeu.12691
– Xavier Grau-Bové, Iñaki Ruiz-Trillo and Manuel Irimia (2018).
Origin of exon skipping-rich transcriptomes in animals driven by evolution of gene architecture.
Genome Biology 2018 19:135 (2018)
–David López-Escardó, Jordi Paps, Colomban de Vargas, Ramon Massana, Iñaki Ruiz-Trillo & Javier del Campo (2018)
Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity.
Scientific Reports volume 8, Article number: 9106 (2018)
– Alicia S. Arroyo, David López-Escardó, Eunsoo Kim, Iñaki Ruiz-Trillo, and Sebastián R. Najle (2018)
Novel Diversity of Deeply Branching Holomycota and Unicellular Holozoans revealed by Metabarcoding in Middle Paraná River, Argentina.
Frontiers in Ecology and Evolution. doi: 10.3389/fevo.2018.00099
-Vidyanand Nanjundiah, Iñaki Ruiz-Trillo, and David Kirk (2018)
Protists and Multiple Routes to the Evolution of Multicellularity.
in Brian K. Hall, Sally A. Moody “Cells in Evolutionary Biology: Translating Genotypes into Phenotypes – Past, Present, Future”
CRC Press; Evolutionary Cell Biology Series
–Andrej Ondracka, Omaya Dudin & Iñaki Ruiz-Trillo (2018)
Decoupling of Nuclear Division Cycles and Cell Size during the Coenocytic Growth of the Ichthyosporean Sphaeroforma arctica
Current Biology. https://doi.org/10.1016/j.cub.2018.04.074
–Michelle M. Leger, Laura Eme, Courtney W. Stairs, Andrew J. Roger (2018)
Demystifying Eukaryote Lateral Gene Transfer
BioEssays 40, 5. https://doi.org/10.1002/bies.201700242
, , , , , , , , , , , , , , , , Comparative genomic analysis of the ‘pseudofungus’ Hyphochytrium catenoides
Open biology 8. DOI: 10.1098/rsob.170184
–Transfection of Capsaspora owczarzaki, a close unicellular relative of animals
-Helena Ćetković, Maja Herak Bosnar, Drago Perina, Andreja Mikoč, Martina Deželjin, Robert Beluži, Helena Bilandžija, Iñaki Ruiz-Trillo & Matija Harcet (2018).
Characterization of a group I Nme protein of Capsaspora owczarzaki—a close unicellular relative of animals
Laboratory Investigation 1-11. doi:10.1038/labinvest.2017.134.
2017
-Albert Rafels-Ybern, Adrian Gabriel Torres, Xavier Grau-Bove, Iñaki Ruiz-Trillo & Lluís Ribas de Pouplana. (2017)
Codon adaptation to tRNAs with Inosine modification at position 34 is widespread among Eukaryotes and present in two Bacterial phyla.
RNA Biology.
–David López-Escardó, Xavier Grau-Bové, Amy Gillaumet-Adkins, Marta Gut, Michael E. Sieracki & Iñaki Ruiz-Trillo (2017).
Evaluation of single-cell genomics to address evolutionary questions using three SAGs of the choanoflagellate Monosiga brevicollis.
Scientific Reports 7. doi:10.1038/s41598-017-11466-9
–Maria Ferrer-Bonet & Iñaki Ruiz-Trillo (2017)
Capsaspora owczarzaki
Current Biology, Vol 27, Issue 17. http://dx.doi.org/10.1016/j.cub.2017.05.074
–Xavier Grau-Bové, Guifré Torruella, Stuart Donachie, Hiroshi Suga, Guy Leonard, Thomas A. Richards & Iñaki Ruiz-Trillo. (2017)
Dynamics of genomic innovation in the unicellular ancestry of animals.
eLife 2017;6:e26036
–David López-Escardó, Purificación López-García, David Moreira, Iñaki Ruiz-Trillo & Guifré Torruella. (2017)
Parvularia atlantis gen. et sp. nov., a Nucleariid Filose Amoeba (Holomycota, Opisthokonta).
The Journal of Eukaryotic Microbiology 2017 Jul 25. doi: 10.1111/jeu.12450.
–Arnau Sebé-Pedrós, Bernard M. Degnan & Iñaki Ruiz-Trillo. (2017)
The origin of Metazoa: a unicellular perspective.
Nature Review Genetics
2017
Arnau Sebé-Pedrós, Marcia Ivonne Peña, Salvador Capella-Gutiérrez, Meritxell Antó, Toni Gabaldón, Iñaki Ruiz-Trillo & Eduard Sabidó. (2016)
High-Throughput Proteomics Reveals the Unicellular Roots of Animal Phosphosignaling and Cell Differentiation.
Developmental Cell 39 (2): p186–197.
Watch video abstract:
–Alicia S. Arroyo, David López-Escardó, Colomban de Vargas & Iñaki Ruiz-Trillo. (2016)
Hidden diversity of Acoelomorpha revealed through metabarcoding.
Biology Letters 12: 20160674. doi.org/10.1098/rsbl.2016.0674
Access supplementary material
–Arnau Sebé-Pedrós & Iñaki Ruiz-Trillo. (2016)
Evolution and Classification of the T-Box Transcription Factor Family.
Current Topics in Developmental Biology, 122: p1-26
-Maureen A. O’Malley, Jeremy G. Wideman & Iñaki Ruiz-Trillo. (2016)
Losing complexity: the role of simplification in macroevolution.
Trends in Ecology and Evolution 31 (8): 608–621
–Sebastián R. Najle, María Celeste Molina, Iñaki Ruiz-Trillo & Antonio D. Uttaro. (2016)
Sterol metabolism in the filasterean Capsaspora owczarzaki has features that resemble both fungi and animals.
Open Biology 6: 160029.
–Arnau Sebé-Pedrós, Cecillia Ballaré, Helena Parra-Acero, Cristina Chiva, Juan J. Tena, Eduard Sabidó, José Luis Gómez-Skarmeta, Luciano Di Croce, Iñaki Ruiz-Trillo. (2016)
The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity.
Cell 165 (5): 1224–1237. doi: 10.1016/j.cell.2016.03.034. .
See Nature’s news and views or watch video abstract:
-Mariona Esquerdo, Xavier Grau-Bové, Alejandro Garanto, Vasileios Toulis, Sílvia Garcia-Monclús, Erica Millo, Mª José López-Iniesta, Víctor Abad-Morales, Iñaki Ruiz-Trillo, Gemma Marfany. (2016)
Expression atlas of the deubiquitinating enzymes in the adult mouse retina, their evolutionary diversification and phenotypic roles.
Plos One 11(3): e0150364. doi:10.1371/journal.pone.0150364
-David A. Gold, Jonathan Grabenstatter, Alex de Mendoza, Ana Riesgo, Iñaki Ruiz-Trillo and Roger E. Summons. (2016)
Sterol and genomic analyses validate the sponge biomarker hypothesis.
Proceedings National Academic of Sciences USA 113(10): 2684-2689 doi: 10.1073/pnas.1512614113
–Iñaki Ruiz-Trillo (2016)
What are the genomes of the premetazoan lineages telling us about the origins of metazoa?
Multicellularity: Origins and Evolution ISBN: 9780262034159
-Iñaki Ruiz-Trillo & Jordi Paps. (2016)
Acoelomorpha: earliest-branching bilaterians or deuterostomes?
Organisms Diversity and Evolution 16: 391. doi:10.1007/s13127-015-0239-1
2015
–Alex de Mendoza, Hiroshi Suga, Jon Permanyer, Manuel Irimia, Iñaki Ruiz-Trillo. (2015)
Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals.
eLife 2015;10.7554/eLife.08904
(Access Creolimax fragrantissima’s genome: http://dx.doi.org/10.6084/m9.figshare.1403592)
–Guifré Torruella, Alex de Mendoza, Xavier Grau-Bové, Meritxell Antó, Mark A. Chaplin, Javier del Campo, Laura Eme, Gregorio Pérez-Cordón, Christopher M. Whipps, Krista M. Nichols, Richard Paley, Andrew J. Roger, Ariadna Sitjà-Bobadilla, Stuart Donachie, and Iñaki Ruiz-Trillo. (2015)
Phylogenomics reveals convergent evolution of lifestyles in close relatives of animals and fungi.
Current Biology 25(18):2404-10.
–Xavier Grau-Bové, Iñaki Ruiz-Trillo, & Francisco Rodriguez-Pascual. (2015)
Origin and evolution of lysyl oxidases.
Scientific Reports, 5, 10568. doi:10.1038/srep10568
-Kamil J. Alzayady, Arnau Sebé-Pedrós, Rahul Chandrasekhar, Liwei Wang, Iñaki Ruiz- Trillo, David I. Yule. (2015)
Tracing the Evolutionary History of Inositol, 1, 4, 5-trisphosphate receptor: Insights from Analyses of Capsaspora owczarzaki Ca2+ Release Channel Orthologs.
Molecular Biology and Evolution 32 (9): 2236-2253. doi: 10.1093/molbev/msv098
–Iñaki Ruiz-Trillo & Aurora Nedelcu (editors). (2015)
Evolutionary transitions to multicellular life: principles and mechanisms
Advances in Marine Genomics Series. Springer.
–Hiroshi Suga and Iñaki Ruiz-Trillo. (2015)
Unraveling the origin of animal multicellularity.
Jikken Igaku (Experimental Medicine) vol.33, no.6, pp968-973.
–Javier del Campo, Diego Mallo, Ramon Massana, Colomban de Vargas, Tom A. Richards & Iñaki Ruiz-Trillo. (2015)
Diversity and distribution of unicellular opisthokonts along the European coast analyzed using high-throughput sequencing.
Environmental Microbiology 17: 3195–3207. doi:10.1111/1462-2920.12759
2014
–Xavier Grau-Bové, Arnau Sebé-Pedrós & Iñaki Ruiz-Trillo. (2014)
The eukaryotic ancestor had a complex ubiquitin signalling system of archaeal origin.
Molecular Biology and Evolution, 32 (3): 726-739.
–Alex de Mendoza & Iñaki Ruiz-Trillo. (2014)
Forward genetics for back-in-time questions.
eLife 3:e04070. doi: 10.7554/eLife.04070
–Javier del Campo, Michael E. Sieracki, Robert Molestina, Patrick Keeling, Ramon Massana & Iñaki Ruiz-Trillo. (2014)
The others: our biased perspective of eukaryotic genomics.
Trends in Ecology and Evolution 29(5): 252-259.
-Alex de Mendoza, Arnau Sebé-Pedrós & Iñaki Ruiz-Trillo. (2014)
The evolution of the GPCR signalling system in eukaryotes: modularity, conservation and the transition to metazoan multicellularity.
Genome Biology and Evolution 6(3):606-19.
–Arnau Sebé-Pedrós, Xavier Grau-Bové, Thomas A. Richards & Iñaki Ruiz-Trillo. (2014)
Evolution and classification of myosins, a paneukaryotic whole genome approach.
Genome Biology and Evolution 6(2):290-305.
Access myosins dataset
–Hiroshi Suga, Guifré Torruella, Gertraud Burger, Matthew W. Brown & Iñaki Ruiz-Trillo. (2014)
Earliest holozoan expansion of phosphotyrosine signaling.
Molecular Biology and Evolution 31 (3): 517-528.
–Bénédicte Desvoyes, Alex de Mendoza, Iñaki Ruiz-Trillo and Crisanto Gutierrez. (2014)
Novel roles of plant RETINOBLASTOMA-RELATED (RBR) protein in cell proliferation and asymmetric cell division.
Journal of Experimental Botany 65(10): 2657-66.
2013
–Arnau Sebé-Pedrós, Manuel Irimia, Javier del Campo, Helena Parra-Acero, Carsten Russ, Chad Nusbaum, Benjamin J. Blencowe & Iñaki Ruiz-Trillo. (2013)
Regulated aggregative multicellularity in a close unicellular relative of Metazoa.
eLife 2013;2:e01287
Access RNAseq data (FPKMs).
–Alex de Mendoza, Arnau Sebé-Pedrós, Martin Sebastijan Šestak, Marija Matejčić,Guifré Torruella, Tomislav Domazet-Lošo & Iñaki Ruiz-Trillo. (2013)
Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages.
Proceedings National Academic of Sciences USA 110 (50) E4858-E4866.
–Arnau Sebé-Pedrós, Ana Ariza-Cosano, Matthew T. Weirauch, Sven Leininger, Ally Yang, Guifré Torruella, Marcin Adamski, Maja Adamska, Timothy R. Hughes, José Luis Gómez-Skarmeta & Iñaki Ruiz-Trillo. (2013)
Early evolution of the T-box transcription factor family.
Proceedings National Academic of Sciences USA 110(40):16050-5.
–Arnau Sebé-Pedrós, Pawel Burkhardt, Núria Sánchez-Pons, Stephen R. Fairclough, B. Franz Lang, Nicole King & Iñaki Ruiz-Trillo. (2013)
Insights into the origin of metazoan filopodia and microvilli.
Molecular Biology and Evolution, 30(9):2013-23.
-Hiroshi Suga, Zehua Chen, Alex de Mendoza, Arnau Sebé-Pedrós, Matthew W. Brown, Eric Kramer, Martin Carr, Pierre Kerner, Michel Vervoort, Núria Sánchez-Pons, Guifré Torruella, Romain Derelle, Gerard Manning, B. Franz. Lang, Carsten Russ, Brian J. Haas, Andrew J. Roger, Chad Nusbaum & Iñaki Ruiz-Trillo. (2013)
The Capsaspora genome reveals a complex unicellular prehistory of animals.
Nature Communications 4: 2325 doi: 10.1038/ncomms3325 (2013).
-José M. Martín-Durán, Alex de Mendoza, Arnau Sebé-Pedrós, Iñaki Ruiz-Trillo & Andreas Hejnol. (2013)
A broad genomic survey reveals multiple origins and frequent losses in the evolution of respiratory hemerythrins and hemocyanins.
Genome Biology and Evolution, 5(7):1435-42.
–Xavier Grau-Bové, Arnau Sebé-Pedrós & Iñaki Ruiz-Trillo. (2013)
A genomic survey of HECT ubiquitin ligases in eukaryotes reveals independent expansions of the HECT system in several lineages.
Genome Biology and Evolution 5(5):833-47. doi: 10.1093/gbe/evt052.
Access alignments
–Javier del Campo & Iñaki Ruiz-Trillo. (2013)
Environmental survey meta-analysis reveals hidden diversity among unicellular opisthokonts.
Molecular Biology and Evolution 30(4): 802-805.
Access alignment
–Alex de Mendoza, Arnau Sebé-Pedrós & Iñaki Ruiz-Trillo. (2013)
El origen de la multicelularidad.
Investigación y Ciencia, Febrero 2013 pp.32-39.
–Hiroshi Suga & Iñaki Ruiz-Trillo. (2013)
Development of ichthyosporeans sheds light on the origin of metazoan multicellularity.
Developmental Biology 377, 284-292.
–Jordi Paps, Luis A. Medina-Chacón, Wyth Marshall, Hiroshi Suga & Iñaki Ruiz-Trillo. (2013)
Molecular phylogeny of Unikonts: new insights into the position of apusomonads and ancyromonads and the internal relationships of opisthokonts.
Protist, 164(1):2-12.
Concatenated alignment
2012
-Kira P. Schultheiss, Hiroshi Suga, Iñaki Ruiz-Trillo & W. Todd Miller. (2012)
Lack of Csk-mediated negative regulation in a unicellular Src kinase.
Biochemistry, 51 (41), pp 8267–8277.
–Hiroshi Suga, Michael Dacre, Alex de Mendoza, Kamran Shalchian-Tabrizi, Gerard Manning & Iñaki Ruiz-Trillo. (2012)
Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases.
Science Signaling, 5 (222), ra35 [DOI: 10.1126/scisignal.2002733]
(listen to Science Signaling Podcast)
-Naiara Rodríguez-Ezpeleta, David Moreira, Iñaki Ruiz-Trillo. (2012)
Amoebozoos, Cromalveolados, Rizarios y Excavados.
In “El árbol de la vida: sistemática y evolución de los seres vivos”, Zardoya R. & Vargas P. eds.
–Iñaki Ruiz-Trillo. (2012)
Eucariotas.
In “El árbol de la vida: sistemática y evolución de los seres vivos”, Zardoya R. & Vargas P. eds.
-Marta Riutort, Jordi Paps, Iñaki Ruiz-Trillo. (2012)
Bilaterales.
In “El árbol de la vida: sistemática y evolución de los seres vivos”, Zardoya R. & Vargas P. eds.
–Arnau Sebé-Pedrós, Yonggang Zheng, Iñaki Ruiz-Trillo & Duojia Pan. (2012)
Premetazoan origin of the Hippo signaling pathway.
Cell Reports, 1(1): 13-20. doi:10.1016/j.cel- rep.2011.11.004
Access sequences
–Guifré Torruella, Romain Derelle, Jordi Paps, B. Franz Lang, Andrew J Roger, Kamran Shalchian-Tabrizi & Iñaki Ruiz-Trillo. (2012)
Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single copy protein domains.
Molecular Biology and Evolution, 29(2): 531-544.
Access matrix
–John D. L. Shadwick & Iñaki Ruiz-Trillo. (2012)
A genomic survey shows that the haloarchaeal type Tyrosyl-Synthetase is not a Synapomorphy of Opisthokonts.
European Journal of Protistology 48(1):89-93.
2011
–Alex de Mendoza & Iñaki Ruiz-Trillo. (2011)
New genomes, new taxa and deep questions in the eukaryotic tree of life: a meeting report on the EMBO comparative genomics conference
Evodevo, 2(1):22.
-Agatha Schlüter, Iñaki Ruiz-Trillo & Aurora Pujol. (2011)
Phylogenomic evidence for a myxococcal contribution to the mitochondrial fatty acid beta-oxidation
Plos ONE, 6(7): e21989. doi:10.1371/journal.pone.0021989
–Alex de Mendoza & Iñaki Ruiz-Trillo. (2011)
The mysterious Evolutionary Origin for the GNE gene and the root of Bilateria
Molecular Biology and Evolution, 28(11): 2987-91.
Access alignments
-Susan Young, D. Diolaiti, M. Conacci-Sorrell, Iñaki Ruiz-Trillo, R. M. Eisenman & Nicole King. (2011)
Premetazoan Ancestry of the Myc-Max Network.
Molecular Biology and Evolution, 28(10): 2961-71.
–Arnau Sebé-Pedrós, Alex de Mendoza, B. Franz Lang, Bernie M. Degnan & Iñaki Ruiz-Trillo. (2011)
Unexpected repertoire of metazoan transcription factors in the unicellular holozoan Capsaspora owczarzaki.
Molecular Biology and Evolution, 28(3): 1241-54.
2010
-Maria José Barberà*, Iñaki Ruiz-Trillo*, Julia Y. A. Tufts, Bery Amandine, Jeffrey D. Silberman & Andrew J. Roger. (*co-authors) (2010)
Sawyeria marylandensis (Heterolobosea) has a hydrogenosome with novel metabolic properties.
Eukaryotic Cell, 9(12):1913-24.
–Jordi Paps & Iñaki Ruiz-Trillo. (2010)
Animals and their unicellular ancestors.
In: Encyclopedia of Life Sciences 2010, John Wiley & Sons, Ltd: Chichester.
–Arnau Sebé-Pedrós & Iñaki Ruiz-Trillo. (2010)
The integrin-mediated adhesion complex: cooption of signaling systems at the dawn of Metazoa.
Communicative & Integrative Biology, 3:5 1-3.
–Alex de Mendoza, Hiroshi Suga & Iñaki Ruiz-Trillo. (2010)
Evolution of the MAGUK protein gene family in premetazoan lineages.
BMC Evolutionary Biology, 10(1): 93.
Alignments
–Arnau Sebé-Pedrós, Andrew J. Roger, Franz B. Lang, Nicole King & Iñaki Ruiz-Trillo. (2010)
Ancient origin of integrin-mediated adhesion and signaling machinery.
Proceedings National Academic of Sciences USA, 107(22): 10142-7.
–Iñaki Ruiz-Trillo. (2010)
Animales y sus ancestros unicelulares. Una visión filogenómica.
In “Adaptación y Evolución. 150 años después del Origen de las Especies SESBE 2009”. Dopazo. & Navarro. eds, Obrapropia Editorial, Valencia.
2010
2009
–Guifré Torruella, Hiroshi Suga, Marta Riutort, Juli Peretó & Iñaki Ruiz-Trillo. (2009)
The evolutionary history of lysine biosynthesis pathways within eukaryotes.
Journal of Molecular Evolution 69(3): 240-248.
Access alignments
2008
–Iñaki Ruiz-Trillo, Andrew J. Roger, Gertraud Burger, Michael W. Gray & B. Franz Lang. (2008)
A phylogenomic investigation into the origin of Metazoa.
Molecular Biology and Evolution, 25 (4): 664-672.
Access alignments
-E. Bapteste, E. Susko, J. Leigh, I. Ruiz-Trillo, J. Bucknam & W. F. Doolittle.(2008)
Alternative Methods for Concatenation of Core Genes Indicate a Lack of Resolution in Deep Nodes of the Prokaryotic Phylogeny.
Molecular Biology and Evolution, 25(1): 83-91.
2007
–Iñaki Ruiz-Trillo, Gertraud Burger, Peter W. H. Holland, Nicole King, B. Franz Lang, Andrew J. Roger & Michael W. Gray. (2007)
The origins of multicellularity: a multi-taxon genome initiative.
Trends in Genetics, 23(3): 113-118.
-Maria J. Barberà, Iñaki Ruiz-Trillo, Jessica Leigh, Laura A. Hug & Andrew J. Roger. (2007)
The diversity of mitochondrion-related organelles amongst eukaryotic microbes.
In “Origins of Mitochondria and Hydrogenosomes”, Martin W. ed., Springer, Heidelberg.
2006
–Iñaki Ruiz-Trillo, Christopher E. Lane, John M. Archibald & Andrew J. Roger. (2006)
Insights into the evolutionary origin and genome architecture of the unicellular opisthokonts Capsaspora owczarzaki and Sphaeroforma arctica.
Journal of Eukaryotic Microbiology, 53(5): 1-6.
-Sina M. Adl, Iñaki Ruiz-Trillo & Melanie L. Wilson. (2006)
Observations on a Geocentrophora sp. (Lecitoepitheliata) flatworm from forest soils in Nova Scotia.
Journal of Natural History 40 (23-24): 1381-1387.
2004
–Iñaki Ruiz-Trillo, Yuji Inagaki, Lesley A. Davis, Sigmund Sperstad, Bjarne Landfald & Andrew J. Roger. (2004)
Capsaspora owczarzaki is an independent opisthokont lineage.
Current Biology 14: R946-R947.
–Iñaki Ruiz-Trillo, Marta Riutort, H. Matthew Fourcade, Jaume Baguñà & Jeffrey L. Boore. (2004)
Mitochondrial genome data support the basal position of Acoelomorpha and the polyphyly of the Platyhelminthes.
Molecular Phylogenetics and Evolution 33: 321- 332, 2004.
2002
–I. Ruiz-Trillo, J. Paps, M. Loukota, C. Ribera, U. Jondelius, J. Baguñà & M. Riutort. (2002)
A phylogenetic analysis of Myosin Heavy Chain type II sequences corroborates Acoela and Nemertodermatida are basal bilaterians.
Proceedings National Academic of Sciences USA 99: 11246-11251.
-Jaume Baguñà, Iñaki Ruiz-Trillo, Jordi Paps & Marta Riutort. (2002)
Origen y evolución de los ejes corporales y la simetría bilateral en animales.
In “Evolución: la base de la Biología” (M.Soler ed.), Proyecto Sur Editorial.
-U. Jondelius, I. Ruiz-Trillo, J. Baguñà & M. Riutort. (2002)
The Nemertodermatida are basal bilaterians and not members of the Platyhelminthes.
Zoologica Scripta 31: 201-215.
2001
–Iñaki Ruiz-Trillo. (2001)
Acoela.
In “McGraw-Hill Encyclopedia of Science and Technology, 2001 Yearbook of Science & Technology”. McGraw-Hill, New York.
-J. Baguñà, I. Ruiz-Trillo, J. Paps, M. Loukota, C.s Ribera, U. Jondelius & M. Riutort. (2001)
The first bilaterian organisms: simple or complex? New molecular evidence.
International Journal of Developmental Biology 45: S133-S134.
2000
-J. Baguñà, S. Carranza, J. Paps, I. Ruiz-Trillo & M. Riutort. (2000)
Molecular taxonomy and phylogeny of Tricladida.
In “Interrelationships of the Platyhelminthes”, Littlewood & Bray Ed., Taylor & Francis, London.
1999
–I. Ruiz-Trillo, M. Riutort, D. T. J. Littlewood, E. A. Herniou & J. Baguñà. (1999)
Acoel flatworms: earliest extant bilaterian metazoans, not members of the Platyhelminthes.
Science 283: 1919-1923.
