You can find the source data per publication below. To browse our public list of source data: FIGSHARE
2020
-Yameng Lu, Eduard Ocaña-Pallarès, David López-Escardó, Iñaki Ruiz-Trillo, […], Justyna Wolinska
Revisiting the phylogenetic position of Caullerya mesnili (Ichthyosporea), a common Daphnia parasite, based on 22 protein-coding genes.
-Anderson da Silva, […], Iñaki Ruiz-Trillo, Meritxell Antó, […], Lourdes Pérez
Antifungal and antiprotozoal green amino acid-based rhamnolipids: Mode of action, antibiofilm efficiency and selective activity against resistant Candida spp. strains and Acanthamoeba castellanii.
Gene similarity networks unveil a potential novel unicellular group closely related to animals from the Tara Oceans expedition.
–Drahomíra Factorová, […], Sebastián R. Najle, Iñaki Ruiz Trillo, […], Julius Lukes (2020)
Genetic tool development in marine protists: emerging model organisms for experimental cell biology
–Alberto Pérez-Posada, Omaya Dudin,
–
2019
–Daniel J Richter, Tera C Levin (2019)
The origin and evolution of cell-intrinsic antibacterial defenses in eukaryotes.
Current Opinion in Genetics and Development 59:111-122
–Omaya Dudin, Andrej Ondracka, Xavier Grau-Bové, Arthur AB Haraldsen, Atsushi Toyoda, Hiroshi Suga, Jon Bråte, Iñaki Ruiz-Trillo (2019)
A unicellular relative of animals generates a layer of polarized cells by actomyosin-dependent cellularization.
eLife;8:e49801
Reconstruction of protein domain evolution using single-cell amplified genomes of uncultured choanoflagellates sheds light on the origin of animals.
Philosophical Transactions of the Royal Society B 374: 20190088–Konstantina Mitsi, Alicia S. Arroyo, Iñaki Ruiz-Trillo (2019)
A global metabarcoding analysis expands molecular diversity of Platyhelminthes and reveals novel early-branching clades.
Biology Letters15: 20190182
-Seitaro Denbo, Katsutoshi Aono, Takaaki Kai, Rei Yagasaki, Iñaki Ruiz-Trillo, Hiroshi Suga (2019)
Revision of the Capsaspora genome using read mating information adjusts the view on premetazoan genome.
Development Growth & Differentation 61(1): 34–42
-Eduard Ocaña-Pallarès, Sebastián R. Najle, Claudio Scazzocchio, Iñaki Ruiz-Trillo (2019)
Reticulate evolution in eukaryotes: Origin and evolution of the nitrate assimilation pathway.
PLoS GENETICS15(2): e1007986
-Maureen A. O’Malley, Michelle M. Leger, Jeremy G. Wideman and Iñaki Ruiz-Trillo (2019)
Concepts of the last eukaryotic common ancestor.
Nature Ecology & Evolution 3, 338–344
2018
– Àlbert Rafels-Ybern, Adrian Gabriel Torres, Noelia Camacho, Andrea Herencia-Ropero, Helena Roura Frigolé, Thomas F Wulff, Marina Raboteg, Albert Bordons, Xavier Grau-Bové, Iñaki Ruiz-Trillo, The expansion of Inosine at the wobble position of tRNAs, and its role in the evolution of proteomes.
Molecular Biology and Evolution 36(4):650–662
– Iñaki Ruiz-Trillo y Maria Ferrer-Bonet (2018).
¿Con quién compartimos el planeta?
Investigación y Ciencia. Diciembre 2018
– Jon Brate, Ralf S. Neumann, Bastian Fromm, Arthur A.B. Haraldsen, James E. Tarver, Hiroshi Suga, Philip C.J. Donoghue, Kevin J. Peterson, Iñaki Ruiz-Trillo, Paul E. Grini, and Kamran Shalchian-Tabrizi (2018)
Unicellular Origin of the Animal MicroRNA Machinery.
Current Biology 28(20):3288-3295.e5
– Sina M. Adl, David Bass, Christopher E. Lane, Julius Lukeš, Conrad L. Schoch, Alexey Smirnov, Sabine Agatha, Cedric Berney, Matthew W. Brown, Fabien Burki, Paco Cárdenas, Ivan Čepička, Ludmila Chistyakova, Javier del Campo, Micah Dunthorn, Bente Edvardsen, Yana Eglit, Laure Guillou, Vladimír Hampl, Aaron A. Heiss, Mona Hoppenrath, Timothy Y. James, Sergey Karpov, Eunsoo Kim, Martin Kolisko, Alexander Kudryavtsev, Daniel J. G. Lahr, Enrique Lara, Line Le Gall, Denis H. Lynn, David G. Mann, Ramon Massana i Molera, Edward A. D. Mitchell, Christine Morrow, Jong Soo Park, Jan W. Pawlowski, Martha J. Powell, Daniel J. Richter, Sonja Rueckert, Lora Shadwick, Satoshi Shimano, Frederick W. Spiegel, Guifré Torruella i Cortes, Noha Youssef, Vasily Zlatogursky, Qianqian Zhang.
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes.
Journal of Eukaryotic Microbiology 2019, 66, 4-119
– Xavier Grau-Bové, Iñaki Ruiz-Trillo and Manuel Irimia (2018).
Origin of exon skipping-rich transcriptomes in animals driven by evolution of gene architecture.
Genome Biology 19,135
–David López-Escardó, Jordi Paps, Colomban de Vargas, Ramon Massana, Iñaki Ruiz-Trillo & Javier del Campo (2018)
Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity.
Scientific Reports 8, 9106
– Alicia S. Arroyo, David López-Escardó, Eunsoo Kim, Iñaki Ruiz-Trillo, and Sebastián R. Najle (2018)
Novel Diversity of Deeply Branching Holomycota and Unicellular Holozoans revealed by Metabarcoding in Middle Paraná River, Argentina.
Frontiers in Ecology and Evolution 6:99
-Vidyanand Nanjundiah, Iñaki Ruiz-Trillo, and David Kirk (2018)
Protists and Multiple Routes to the Evolution of Multicellularity.
In “Cells in Evolutionary Biology: Translating Genotypes into Phenotypes – Past, Present, Future”. Brian K. Hall, Sally A. Moody eds.
CRC Press; Evolutionary Cell Biology Series.
–Andrej Ondracka, Omaya Dudin & Iñaki Ruiz-Trillo (2018)
Decoupling of Nuclear Division Cycles and Cell Size during the Coenocytic Growth of the Ichthyosporean Sphaeroforma arctica.
Current Biology 28(12), 1964-1969.e2
–Michelle M. Leger, Laura Eme, Courtney W. Stairs, Andrew J. Roger (2018)
Demystifying Eukaryote Lateral Gene Transfer.
BioEssays 2018 40, 1700242
, , , , , , , , , , , , , , , ,
–Transfection of Capsaspora owczarzaki, a close unicellular relative of animals.
-Helena Ćetković, Maja Herak Bosnar, Drago Perina, Andreja Mikoč, Martina Deželjin, Robert Beluži, Helena Bilandžija, Iñaki Ruiz-Trillo & Matija Harcet (2018).
Characterization of a group I Nme protein of Capsaspora owczarzaki—a close unicellular relative of animals.
Laboratory Investigation 98, 304-314 (2018)
2017
-Albert Rafels-Ybern, Adrian Gabriel Torres, Xavier Grau-Bové, Iñaki Ruiz-Trillo & Lluís Ribas de Pouplana. (2017)
Codon adaptation to tRNAs with Inosine modification at position 34 is widespread among Eukaryotes and present in two Bacterial phyla.
RNA Biology 15:4-5, 500-507
–David López-Escardó, Xavier Grau-Bové, Amy Gillaumet-Adkins, Marta Gut, Michael E. Sieracki & Iñaki Ruiz-Trillo (2017).
Evaluation of single-cell genomics to address evolutionary questions using three SAGs of the choanoflagellate Monosiga brevicollis.
Scientific Reports 7,11025 (2017)
–Maria Ferrer-Bonet & Iñaki Ruiz-Trillo (2017)
Capsaspora owczarzaki.
Current Biology 27(17), PR829-R830
–Xavier Grau-Bové, Guifré Torruella, Stuart Donachie, Hiroshi Suga, Guy Leonard, Thomas A. Richards & Iñaki Ruiz-Trillo. (2017)
Dynamics of genomic innovation in the unicellular ancestry of animals.
eLife;6:e26036
–David López-Escardó, Purificación López-García, David Moreira, Iñaki Ruiz-Trillo & Guifré Torruella. (2017)
Parvularia atlantis gen. et sp. nov., a Nucleariid Filose Amoeba (Holomycota, Opisthokonta).
Journal of Eukaryotic Microbiology 65, 170-179
–Arnau Sebé-Pedrós, Bernard M. Degnan & Iñaki Ruiz-Trillo. (2017)
The origin of Metazoa: a unicellular perspective.
Nature Review Genetics 18, 498–512 (2017)
2016
Arnau Sebé-Pedrós, Marcia Ivonne Peña, Salvador Capella-Gutiérrez, Meritxell Antó, Toni Gabaldón, Iñaki Ruiz-Trillo & Eduard Sabidó. (2016)
High-Throughput Proteomics Reveals the Unicellular Roots of Animal Phosphosignaling and Cell Differentiation.
Developmental Cell 39 (2): p186–197
Watch video abstract:
–Alicia S. Arroyo, David López-Escardó, Colomban de Vargas & Iñaki Ruiz-Trillo. (2016)
Hidden diversity of Acoelomorpha revealed through metabarcoding.
Biology Letters 12: 20160674
Access supplementary material
–Arnau Sebé-Pedrós & Iñaki Ruiz-Trillo. (2016)
Evolution and Classification of the T-Box Transcription Factor Family.
Current Topics in Developmental Biology, 122: p1-26
-Maureen A. O’Malley, Jeremy G. Wideman & Iñaki Ruiz-Trillo. (2016)
Losing complexity: the role of simplification in macroevolution.
Trends in Ecology and Evolution 31 (8): 608–621
–Sebastián R. Najle, María Celeste Molina, Iñaki Ruiz-Trillo & Antonio D. Uttaro. (2016)
Sterol metabolism in the filasterean Capsaspora owczarzaki has features that resemble both fungi and animals.
Open Biology 6: 160029
–Arnau Sebé-Pedrós, Cecillia Ballaré, Helena Parra-Acero, Cristina Chiva, Juan J. Tena, Eduard Sabidó, José Luis Gómez-Skarmeta, Luciano Di Croce, Iñaki Ruiz-Trillo. (2016)
The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity.
Cell 165 (5): 1224–1237
See Nature’s news and views or watch video abstract:
-Mariona Esquerdo, Xavier Grau-Bové, Alejandro Garanto, Vasileios Toulis, Sílvia Garcia-Monclús, Erica Millo, Mª José López-Iniesta, Víctor Abad-Morales, Iñaki Ruiz-Trillo, Gemma Marfany. (2016)
Expression atlas of the deubiquitinating enzymes in the adult mouse retina, their evolutionary diversification and phenotypic roles.
PLoS ONE 11(3): e0150364
-David A. Gold, Jonathan Grabenstatter, Alex de Mendoza, Ana Riesgo, Iñaki Ruiz-Trillo and Roger E. Summons. (2016)
Sterol and genomic analyses validate the sponge biomarker hypothesis.
PNAS 113(10): 2684-2689
–Iñaki Ruiz-Trillo (2016)
What are the genomes of the premetazoan lineages telling us about the origins of metazoa?
Multicellularity: Origins and Evolution
-Iñaki Ruiz-Trillo & Jordi Paps. (2016)
Acoelomorpha: earliest-branching bilaterians or deuterostomes?
Organisms Diversity and Evolution 16: 391-399
2015
–Alex de Mendoza, Hiroshi Suga, Jon Permanyer, Manuel Irimia, Iñaki Ruiz-Trillo. (2015)
Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals.
eLife 2015; 4:e08904
(Access Creolimax fragrantissima’s genome: http://dx.doi.org/10.6084/m9.figshare.1403592)
–Guifré Torruella, Alex de Mendoza, Xavier Grau-Bové, Meritxell Antó, Mark A. Chaplin, Javier del Campo, Laura Eme, Gregorio Pérez-Cordón, Christopher M. Whipps, Krista M. Nichols, Richard Paley, Andrew J. Roger, Ariadna Sitjà-Bobadilla, Stuart Donachie, and Iñaki Ruiz-Trillo. (2015)
Phylogenomics reveals convergent evolution of lifestyles in close relatives of animals and fungi.
Current Biology 25(18):2404-10
–Xavier Grau-Bové, Iñaki Ruiz-Trillo, & Francisco Rodriguez-Pascual. (2015)
Origin and evolution of lysyl oxidases.
Scientific Reports 5:10568
-Kamil J. Alzayady, Arnau Sebé-Pedrós, Rahul Chandrasekhar, Liwei Wang, Iñaki Ruiz- Trillo, David I. Yule. (2015)
Tracing the Evolutionary History of Inositol, 1, 4, 5-trisphosphate receptor: Insights from Analyses of Capsaspora owczarzaki Ca2+ Release Channel Orthologs.
Molecular Biology and Evolution 32 (9): 2236-2253
–Iñaki Ruiz-Trillo & Aurora Nedelcu (editors). (2015)
Evolutionary transitions to multicellular life: principles and mechanisms.
Advances in Marine Genomics Series. Springer.
–Hiroshi Suga and Iñaki Ruiz-Trillo. (2015)
Unraveling the origin of animal multicellularity.
Jikken Igaku (Experimental Medicine) vol.33, no.6, pp968-973.
–Javier del Campo, Diego Mallo, Ramon Massana, Colomban de Vargas, Tom A. Richards & Iñaki Ruiz-Trillo. (2015)
Diversity and distribution of unicellular opisthokonts along the European coast analyzed using high-throughput sequencing.
Environmental Microbiology 17(9), 3195–3207
2014
–Xavier Grau-Bové, Arnau Sebé-Pedrós & Iñaki Ruiz-Trillo. (2014)
The eukaryotic ancestor had a complex ubiquitin signalling system of archaeal origin.
Molecular Biology and Evolution 32 (3): 726-739
–Alex de Mendoza & Iñaki Ruiz-Trillo. (2014)
Multicellularity: Forward genetics for back-in-time questions.
eLife 3:e05218
–Javier del Campo, Michael E. Sieracki, Robert Molestina, Patrick Keeling, Ramon Massana & Iñaki Ruiz-Trillo. (2014)
The others: our biased perspective of eukaryotic genomics.
Trends in Ecology and Evolution 29(5): 252-259
-Alex de Mendoza, Arnau Sebé-Pedrós & Iñaki Ruiz-Trillo. (2014)
The evolution of the GPCR signalling system in eukaryotes: modularity, conservation and the transition to metazoan multicellularity.
Genome Biology and Evolution 6(3):606-19
–Arnau Sebé-Pedrós, Xavier Grau-Bové, Thomas A. Richards & Iñaki Ruiz-Trillo. (2014)
Evolution and classification of myosins, a paneukaryotic whole genome approach.
Genome Biology and Evolution 6(2):290-305
Access myosins dataset
–Hiroshi Suga, Guifré Torruella, Gertraud Burger, Matthew W. Brown & Iñaki Ruiz-Trillo. (2014)
Earliest holozoan expansion of phosphotyrosine signaling.
Molecular Biology and Evolution 31 (3): 517-528
–Bénédicte Desvoyes, Alex de Mendoza, Iñaki Ruiz-Trillo and Crisanto Gutierrez. (2014)
Novel roles of plant RETINOBLASTOMA-RELATED (RBR) protein in cell proliferation and asymmetric cell division.
Journal of Experimental Botany 65(10): 2654-66
2013
–Arnau Sebé-Pedrós, Manuel Irimia, Javier del Campo, Helena Parra-Acero, Carsten Russ, Chad Nusbaum, Benjamin J. Blencowe & Iñaki Ruiz-Trillo. (2013)
Regulated aggregative multicellularity in a close unicellular relative of Metazoa.
eLife 2013;2:e01287
Access RNAseq data (FPKMs).
–Alex de Mendoza, Arnau Sebé-Pedrós, Martin Sebastijan Šestak, Marija Matejčić,Guifré Torruella, Tomislav Domazet-Lošo & Iñaki Ruiz-Trillo. (2013)
Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages.
Proceedings National Academic of Sciences USA 110 (50) E4858-E4866
–Arnau Sebé-Pedrós, Ana Ariza-Cosano, Matthew T. Weirauch, Sven Leininger, Ally Yang, Guifré Torruella, Marcin Adamski, Maja Adamska, Timothy R. Hughes, José Luis Gómez-Skarmeta & Iñaki Ruiz-Trillo. (2013)
Early evolution of the T-box transcription factor family.
Proceedings National Academic of Sciences USA 110(40):16050-16055
–Arnau Sebé-Pedrós, Pawel Burkhardt, Núria Sánchez-Pons, Stephen R. Fairclough, B. Franz Lang, Nicole King & Iñaki Ruiz-Trillo. (2013)
Insights into the origin of metazoan filopodia and microvilli.
Molecular Biology and Evolution 30(9):2013-2023
-Hiroshi Suga, Zehua Chen, Alex de Mendoza, Arnau Sebé-Pedrós, Matthew W. Brown, Eric Kramer, Martin Carr, Pierre Kerner, Michel Vervoort, Núria Sánchez-Pons, Guifré Torruella, Romain Derelle, Gerard Manning, B. Franz. Lang, Carsten Russ, Brian J. Haas, Andrew J. Roger, Chad Nusbaum & Iñaki Ruiz-Trillo. (2013)
The Capsaspora genome reveals a complex unicellular prehistory of animals.
Nature Communications 4: 2325 (2013)
-José M. Martín-Durán, Alex de Mendoza, Arnau Sebé-Pedrós, Iñaki Ruiz-Trillo & Andreas Hejnol. (2013)
A broad genomic survey reveals multiple origins and frequent losses in the evolution of respiratory hemerythrins and hemocyanins.
Genome Biology and Evolution 5(7):1435-42
–Xavier Grau-Bové, Arnau Sebé-Pedrós & Iñaki Ruiz-Trillo. (2013)
A genomic survey of HECT ubiquitin ligases in eukaryotes reveals independent expansions of the HECT system in several lineages.
Genome Biology and Evolution 5(5):833-47
Access alignments
–Javier del Campo & Iñaki Ruiz-Trillo. (2013)
Environmental survey meta-analysis reveals hidden diversity among unicellular opisthokonts.
Molecular Biology and Evolution 30(4): 802-805
Access alignment
–Alex de Mendoza, Arnau Sebé-Pedrós & Iñaki Ruiz-Trillo. (2013)
El origen de la multicelularidad.
Investigación y Ciencia Febrero pp.32-39
–Hiroshi Suga & Iñaki Ruiz-Trillo. (2013)
Development of ichthyosporeans sheds light on the origin of metazoan multicellularity.
Developmental Biology 377(1):284-292
–Jordi Paps, Luis A. Medina-Chacón, Wyth Marshall, Hiroshi Suga & Iñaki Ruiz-Trillo. (2013)
Molecular phylogeny of Unikonts: new insights into the position of apusomonads and ancyromonads and the internal relationships of opisthokonts.
Protist 164(1):2-12
Concatenated alignment
2012
-Kira P. Schultheiss, Hiroshi Suga, Iñaki Ruiz-Trillo & W. Todd Miller. (2012)
Lack of Csk-mediated negative regulation in a unicellular Src kinase.
Biochemistry 51 (41), pp 8267–8277
–Hiroshi Suga, Michael Dacre, Alex de Mendoza, Kamran Shalchian-Tabrizi, Gerard Manning & Iñaki Ruiz-Trillo. (2012)
Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases.
Science Signaling 5 (222), ra35
(listen to Science Signaling Podcast)
-Naiara Rodríguez-Ezpeleta, David Moreira, Iñaki Ruiz-Trillo. (2012)
“Protistas”:Amoebozoa, Rhizaria, Excavata, Hacrobia, Heterokonta y Alveolata.
In “El árbol de la vida: sistemática y evolución de los seres vivos”. Zardoya R. & Vargas P. eds.
–Iñaki Ruiz-Trillo. (2012)
Eucariotas.
In “El árbol de la vida: sistemática y evolución de los seres vivos”. Zardoya R. & Vargas P. eds.
-Marta Riutort, Jordi Paps, Iñaki Ruiz-Trillo. (2012)
Bilaterales.
In “El árbol de la vida: sistemática y evolución de los seres vivos”. Zardoya R. & Vargas P. eds.
–Arnau Sebé-Pedrós, Yonggang Zheng, Iñaki Ruiz-Trillo & Duojia Pan. (2012)
Premetazoan origin of the Hippo signaling pathway.
Cell Reports 1(1): 13-20
Access sequences
–Guifré Torruella, Romain Derelle, Jordi Paps, B. Franz Lang, Andrew J Roger, Kamran Shalchian-Tabrizi & Iñaki Ruiz-Trillo. (2012)
Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single copy protein domains.
Molecular Biology and Evolution 29(2): 531-544
Access matrix
–John D. L. Shadwick & Iñaki Ruiz-Trillo. (2012)
A genomic survey shows that the haloarchaeal type Tyrosyl-Synthetase is not a Synapomorphy of Opisthokonts.
European Journal of Protistology 48(1):89-93
2011
–Alex de Mendoza & Iñaki Ruiz-Trillo. (2011)
New genomes, new taxa and deep questions in the eukaryotic tree of life: a meeting report on the EMBO comparative genomics conference.
Evodevo 2(1):22
-Agatha Schlüter, Iñaki Ruiz-Trillo & Aurora Pujol. (2011)
Phylogenomic evidence for a myxococcal contribution to the mitochondrial fatty acid beta-oxidation.
PLoS ONE 6(7): e21989
–Alex de Mendoza & Iñaki Ruiz-Trillo. (2011)
The mysterious Evolutionary Origin for the GNE gene and the root of Bilateria.
Molecular Biology and Evolution 28(11): 2987-91
Access alignments
-Susan Young, D. Diolaiti, M. Conacci-Sorrell, Iñaki Ruiz-Trillo, R. M. Eisenman & Nicole King. (2011)
Premetazoan Ancestry of the Myc-Max Network.
Molecular Biology and Evolution 28(10): 2961-71
–Arnau Sebé-Pedrós, Alex de Mendoza, B. Franz Lang, Bernie M. Degnan & Iñaki Ruiz-Trillo. (2011)
Unexpected repertoire of metazoan transcription factors in the unicellular holozoan Capsaspora owczarzaki.
Molecular Biology and Evolution 28(3): 1241-54
2010
-Maria José Barberà*, Iñaki Ruiz-Trillo*, Julia Y. A. Tufts, Bery Amandine, Jeffrey D. Silberman & Andrew J. Roger. (*co-authors) (2010)
Sawyeria marylandensis (Heterolobosea) has a hydrogenosome with novel metabolic properties.
Eukaryotic Cell 9(12):1913-24
–Jordi Paps & Iñaki Ruiz-Trillo. (2010)
Animals and their unicellular ancestors.
In “Encyclopedia of Life Sciences” 2010. John Wiley & Sons, Ltd: Chichester.
–Arnau Sebé-Pedrós & Iñaki Ruiz-Trillo. (2010)
The integrin-mediated adhesion complex: cooption of signaling systems at the dawn of Metazoa.
Communicative & Integrative Biology 3:5 475-477
–Alex de Mendoza, Hiroshi Suga & Iñaki Ruiz-Trillo. (2010)
Evolution of the MAGUK protein gene family in premetazoan lineages.
BMC Evolutionary Biology 10(1):93
Alignments
–Arnau Sebé-Pedrós, Andrew J. Roger, Franz B. Lang, Nicole King & Iñaki Ruiz-Trillo. (2010)
Ancient origin of integrin-mediated adhesion and signaling machinery.
Proceedings National Academic of Sciences USA 107(22): 10142-10147
–Iñaki Ruiz-Trillo. (2010)
Animales y sus ancestros unicelulares. Una visión filogenómica.
In “Adaptación y Evolución. 150 años después del Origen de las Especies” SESBE 2009. Dopazo. & Navarro. eds, Obrapropia Editorial, Valencia.
2009
–Guifré Torruella, Hiroshi Suga, Marta Riutort, Juli Peretó & Iñaki Ruiz-Trillo. (2009)
The evolutionary history of lysine biosynthesis pathways within eukaryotes.
Journal of Molecular Evolution 69(3): 240-248
Access alignments
2008
–Iñaki Ruiz-Trillo, Andrew J. Roger, Gertraud Burger, Michael W. Gray & B. Franz Lang. (2008)
A phylogenomic investigation into the origin of Metazoa.
Molecular Biology and Evolution 25 (4): 664-672
Access alignments
-E. Bapteste, E. Susko, J. Leigh, I. Ruiz-Trillo, J. Bucknam & W. F. Doolittle.(2008)
Alternative Methods for Concatenation of Core Genes Indicate a Lack of Resolution in Deep Nodes of the Prokaryotic Phylogeny.
Molecular Biology and Evolution 25(1): 83-91
2007
–Iñaki Ruiz-Trillo, Gertraud Burger, Peter W. H. Holland, Nicole King, B. Franz Lang, Andrew J. Roger & Michael W. Gray. (2007)
The origins of multicellularity: a multi-taxon genome initiative.
Trends in Genetics 23(3): 113-118
-Maria J. Barberà, Iñaki Ruiz-Trillo, Jessica Leigh, Laura A. Hug & Andrew J. Roger. (2007)
The diversity of mitochondrion-related organelles amongst eukaryotic microbes.
In “Origins of Mitochondria and Hydrogenosomes”. Martin W. ed., Springer, Heidelberg.
2006
–Iñaki Ruiz-Trillo, Christopher E. Lane, John M. Archibald & Andrew J. Roger. (2006)
Insights into the evolutionary origin and genome architecture of the unicellular opisthokonts Capsaspora owczarzaki and Sphaeroforma arctica.
Journal of Eukaryotic Microbiology 53(5): 1-6
-Sina M. Adl, Iñaki Ruiz-Trillo & Melanie L. Wilson. (2006)
Observations on a Geocentrophora sp. (Lecitoepitheliata) flatworm from forest soils in Nova Scotia.
Journal of Natural History 40 (23-24): 1381-1387
2004
–Iñaki Ruiz-Trillo, Yuji Inagaki, Lesley A. Davis, Sigmund Sperstad, Bjarne Landfald & Andrew J. Roger. (2004)
Capsaspora owczarzaki is an independent opisthokont lineage.
Current Biology 14: R946-R947
–Iñaki Ruiz-Trillo, Marta Riutort, H. Matthew Fourcade, Jaume Baguñà & Jeffrey L. Boore. (2004)
Mitochondrial genome data support the basal position of Acoelomorpha and the polyphyly of the Platyhelminthes.
Molecular Phylogenetics and Evolution 33: 321- 332, 2004
2002
–I. Ruiz-Trillo, J. Paps, M. Loukota, C. Ribera, U. Jondelius, J. Baguñà & M. Riutort. (2002)
A phylogenetic analysis of Myosin Heavy Chain type II sequences corroborates Acoela and Nemertodermatida are basal bilaterians.
Proceedings National Academic of Sciences USA 99:11246-11251
-Jaume Baguñà, Iñaki Ruiz-Trillo, Jordi Paps & Marta Riutort. (2002)
Origen y evolución de los ejes corporales y la simetría bilateral en animales.
In “Evolución: la base de la Biología” (M.Soler ed.), Proyecto Sur Editorial.
-U. Jondelius, I. Ruiz-Trillo, J. Baguñà & M. Riutort. (2002)
The Nemertodermatida are basal bilaterians and not members of the Platyhelminthes.
Zoologica Scripta 31: 201-215
2001
–Iñaki Ruiz-Trillo. (2001)
Acoela.
In “McGraw-Hill Encyclopedia of Science and Technology, 2001 Yearbook of Science & Technology”. McGraw-Hill, New York.
-J. Baguñà, I. Ruiz-Trillo, J. Paps, M. Loukota, C.s Ribera, U. Jondelius & M. Riutort. (2001)
The first bilaterian organisms: simple or complex? New molecular evidence.
International Journal of Developmental Biology 45: S133-S134
2000
-J. Baguñà, S. Carranza, J. Paps, I. Ruiz-Trillo & M. Riutort. (2000)
Molecular taxonomy and phylogeny of Tricladida.
In “Interrelationships of the Platyhelminthes”, Littlewood & Bray Ed., Taylor & Francis, London.
1999
–I. Ruiz-Trillo, M. Riutort, D. T. J. Littlewood, E. A. Herniou & J. Baguñà. (1999)
Acoel flatworms: earliest extant bilaterian metazoans, not members of the Platyhelminthes.
Science 283: 1919-1923
