Selected Publications

ArnauPrint Sebé-Pedrós, Cecillia Ballaré, Helena Parra-Acero, Cristina Chiva, Juan J. Tena, Eduard Sabidó, José Luis Gómez-Skarmeta, Luciano Di Croce, Iñaki Ruiz-Trillo.
(2016)

The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity.
Cell  doi: 10.1016/j.cell.2016.03.034
(see Nature’s news and views

Alex de MendozaHiroshi Suga, Jon Permanyer, Manuel Irimia, Iñaki Ruiz-Trillo. (2015)
Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals.
eLife 2015;10.7554/eLife.08904
(see also 
http://dx.doi.org/10.6084/m9.figshare.1403592)

Guifré Torruella, Alex de Mendoza, Xavier Grau-Bové, Meritxell Antó, Mark A. Chaplin, Javier del Campo, Laura Eme, Gregorio Pérez-Cordón, Christopher M. Whipps, Krista M. Nichols, Richard Paley, Andrew J. Roger, Ariadna Sitjà-Bobadilla, Stuart Donachie, and Iñaki Ruiz-Trillo. (2015)
Phylogenomics reveals convergent evolution of lifestyles in close relatives of animals and fungi.

Current Biology 25(18):2404-10.

Javier del Campo, Michael E. Sieracki, Robert Molestina, Patrick Keeling, Ramon Massana & Iñaki Ruiz-Trillo. (2014)
The others: our biased perspective of eukaryotic genomics.
Trends in Ecology and Evolution 29(5): 252-259.


Arnau Sebé-Pedrós, Manuel Irimia, Javier del CampoHelena Parra-Acero, Carsten Russ, Chad Nusbaum, Benjamin J. Blencowe & Iñaki Ruiz-Trillo. (2013)

Regulated aggregative multicellularity in a close unicellular relative of Metazoa.

Alex de MendozaArnau Sebé-Pedrós, Martin Sebastijan Šestak, Marija Matejčić,Guifré Torruella, Tomislav Domazet-Lošo & Iñaki Ruiz-Trillo. (2013)
Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages.

Arnau Sebé-Pedrós, Ana Ariza-Cosano, Matthew T. Weirauch, Sven Leininger, Ally Yang, Guifré Torruella, Marcin Adamski, Maja Adamska, Timothy R. Hughes, José Luis Gómez-Skarmeta & Iñaki Ruiz-Trillo. (2013)
Early evolution of the T-box transcription factor family.
Proceedings National Academic of Sciences USA 110(40):16050-5.

-Hiroshi Suga, Zehua Chen, Alex de MendozaArnau Sebé-Pedrós, Matthew W. Brown, Eric Kramer, Martin Carr, Pierre Kerner, Michel Vervoort,  Núria Sánchez-PonsGuifré TorruellaRomain Derelle, Gerard Manning, B. Franz. Lang, Carsten Russ, Brian J. Haas, Andrew J. Roger, Chad Nusbaum & Iñaki Ruiz-Trillo. (2013)
The Capsaspora genome reveals a complex unicellular prehistory of animals.
Nature Communications 4: 2325 doi: 10.1038/ncomms3325 (2013).

Hiroshi Suga, Michael Dacre, Alex de Mendoza, Kamran Shalchian-Tabrizi, Gerard Manning & Iñaki Ruiz-Trillo. (2012)
Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases.
Science Signaling 5 (222), ra35 [DOI: 10.1126/scisignal.2002733] (see electronic reprint)
(listen to Science Signaling Podcast)

-Arnau Sebé-PedrósYonggang Zheng, Iñaki Ruiz-Trillo & Duojia Pan. (2012)
Premetazoan origin of the Hippo signaling pathway.
Cell Reports 1(1): 13-20. doi:10.1016/j.cel- rep.2011.11.004
(see news in Cell Reports) (chosen among the Best of Cell Reports articles of 2012).